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ENMeval 2.0:Redesigned forcustomizable andreproducible modelingof species’ nichesand distributions Jamie M. KassRobert MuscarellaPeter J. Galante2021 год

ENMeval 2.0: Redesigned for customizable and reproducible modeling of species’ niches and distributions
статья из журнала

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Аннотация: Abstract Quantitative evaluations to optimize complexity have become standard for avoiding overfitting of ecological niche models (ENMs) that estimate species’ potential geographic distributions. ENMeval was the first R package to make such evaluations (often termed model tuning) widely accessible for the Maxent algorithm. It also provided multiple methods for partitioning occurrence data and reported various performance metrics. Requests by users, recent developments in the field, and needs for software compatibility led to a major redesign and expansion. We additionally conducted a literature review to investigate trends in ENMeval use (2015–2019). ENMeval 2.0 has a new object‐oriented structure for adding other algorithms, enables customizing algorithmic settings and performance metrics, generates extensive metadata, implements a null‐model approach to quantify significance and effect sizes, and includes features to increase the breadth of analyses and visualizations. In our literature review, we found insufficient reporting of model performance and parameterization, heavy reliance on model selection with AICc and low utilization of spatial cross‐validation; we explain how ENMeval 2.0 can help address these issues. This redesigned and expanded version can promote progress in the field and improve the information available for decision‐making. ​
Год издания: 2021
Авторы: Jamie M. Kass, Robert Muscarella, Peter J. Galante, Corentin Bohl, Gonzalo E. Pinilla‐Buitrago, Robert A. Boria, Mariano Soley‐Guardia, Robert P. Anderson
Издательство: Wiley
Источник: Methods in Ecology and Evolution
Ключевые слова: Species Distribution and Climate Change, Zoonotic diseases and public health, Wildlife Ecology and Conservation
Другие ссылки: Methods in Ecology and Evolution (HTML)
Uppsala University Publications (Uppsala University) (PDF)
Uppsala University Publications (Uppsala University) (HTML)
Okinawa Institute of Science and Technology Graduate University (Okinawa Institute of Science and Technology Graduate University) (PDF)
Okinawa Institute of Science and Technology Graduate University (Okinawa Institute of Science and Technology Graduate University) (HTML)
Okinawa Institute of Science and Technology Graduate University (Okinawa Institute of Science and Technology Graduate University) (HTML)