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Open scienceresources for thediscovery andanalysis of TaraOceans data Stéphane PesantFabrice NotMarc Picheral2015 год

Open science resources for the discovery and analysis of Tara Oceans data
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Аннотация: Abstract The Tara Oceans expedition (2009–2013) sampled contrasting ecosystems of the world oceans, collecting environmental data and plankton, from viruses to metazoans, for later analysis using modern sequencing and state-of-the-art imaging technologies. It surveyed 210 ecosystems in 20 biogeographic provinces, collecting over 35,000 samples of seawater and plankton. The interpretation of such an extensive collection of samples in their ecological context requires means to explore, assess and access raw and validated data sets. To address this challenge, the Tara Oceans Consortium offers open science resources, including the use of open access archives for nucleotides (ENA) and for environmental, biogeochemical, taxonomic and morphological data (PANGAEA), and the development of on line discovery tools and collaborative annotation tools for sequences and images. Here, we present an overview of Tara Oceans Data, and we provide detailed registries (data sets) of all campaigns (from port-to-port), stations and sampling events.
Год издания: 2015
Авторы: Stéphane Pesant, Fabrice Not, Marc Picheral, Stefanie Kandels‐Lewis, Noan Le Bescot, Gabriel Gorsky, Daniele Iudicone, Eric Karsenti, Sabrina Speich, Romain Troublé, Céline Dimier, Sarah Searson, Silvia G. Acinas, Peer Bork, Emmanuel Boss, Chris Bowler, Colomban de Vargas, Michael Follows, Gabriel Gorsky, Nigel Grimsley, Pascal Hingamp, Daniele Iudicone, Olivier Jaillon, Stefanie Kandels‐Lewis, Lee Karp-Boss, Eric Karsenti, Uroš Kržič, Fabrice Not, Hiroyuki Ogata, Stéphane Pesant, Jeroen Raes, Emmanuel G. Reynaud, Christian Sardet, Michael E. Sieracki, Sabrina Speich, Lars Stemmann, Matthew B. Sullivan, Shinichi Sunagawa, Didier Velayoudon, Jean Weissenbach, Patrick Wincker
Издательство: Nature Portfolio
Источник: Scientific Data
Ключевые слова: Microbial Community Ecology and Physiology, Environmental DNA in Biodiversity Studies
Другие ссылки: Scientific Data (PDF)
Scientific Data (HTML)
HAL (Le Centre pour la Communication Scientifique Directe) (HTML)
HAL (Le Centre pour la Communication Scientifique Directe) (PDF)
HAL (Le Centre pour la Communication Scientifique Directe) (HTML)
Europe PMC (PubMed Central) (PDF)
Europe PMC (PubMed Central) (HTML)
PubMed Central (HTML)
Lirias (KU Leuven) (PDF)
Lirias (KU Leuven) (HTML)
www.biorxiv.org (PDF)
doi.org (HTML)
HAL (Le Centre pour la Communication Scientifique Directe) (HTML)
HAL (Le Centre pour la Communication Scientifique Directe) (HTML)
Institutional Archive of Ifremer (French Research Institute for Exploitation of the Sea) (PDF)
Institutional Archive of Ifremer (French Research Institute for Exploitation of the Sea) (HTML)
HAL (Le Centre pour la Communication Scientifique Directe) (HTML)
PubMed (HTML)