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Chromosome-scaleElaeis guineensis andE. oleiferaassemblies:Comparative genomicsof oil palm and otherArecaceae Low Eng-Ti LeslieChan Kuang-LimZaki Noorhariza Mohd2024 год

Chromosome-scale Elaeis guineensis and E. oleifera assemblies: Comparative genomics of oil palm and other Arecaceae
статья из журнала

Дополнительные ссылки: eLibrary
База данных: Каталог библиотеки СФУ
Библиографическое описание: Chromosome-scale Elaeis guineensis and E. oleifera assemblies: Comparative genomics of oil palm and other Arecaceae : научное издание / E. L. Low [et al.]. - Текст : непосредственный // G3: Genes, Genomes, Genetics. - 2024. - № . - ISSN 2160-1836, DOI 10.1093/g3journal/jkae135.
Аннотация: <jats:title>Abstract</jats:title> <jats:p>Elaeis guineensis and E. oleifera are the two species of oil palm. E. guineensis is the most widely cultivated commercial species, and introgression of desirable traits from E. oleifera is ongoing. We report an improved E. guineensis genome assembly with substantially increased continuity and completeness, as well as the first chromosome-scale E. oleifera genome assembly. Each assembly was obtained by integration of long-read sequencing, proximity ligation sequencing, optical mapping and genetic mapping. High interspecific genome conservation is observed between the two species. The study provides the most extensive gene annotation to date, including 46,697 E. guineensis and 38,658 E. oleifera gene predictions. Analyses of repetitive element families further resolve the DNA repeat architecture of both genomes. Comparative genomic analyses identified experimentally validated small structural variants between the oil palm species and resolved the mechanism of chromosomal fusions responsible for the evolutionary descending dysploidy from 18 to 16 chromosomes.</jats:p>
Год издания: 2024
Авторы: Low Eng-Ti Leslie , Chan Kuang-Lim , Zaki Noorhariza Mohd , Taranenko Elizaveta , Ordway Jared M , Wischmeyer Corey , Buntjer Jaap , Halim Mohd Amin Ab , Sanusi Nik Shazana Nik Mohd , Nagappan Jayanthi , Rosli Rozana , Bondar Eugeniya , Amiruddin Nadzirah , Sarpan Norashikin , Ting Ngoot-Chin , Chan Pek-Lan , Ong-Abdullah Meilina , Marjuni Marhalil , Mustaffa Suzana , Abdullah Norziha , Azizi Norazah , Bacher Blaire , Lakey Nathan , Tatarinova Tatiana V , Manaf Mohamad Arif Abd , Sambanthamurti Ravigadevi , Singh Rajinder
Источник: G3: Genes, Genomes, Genetics
Держатель оригинала документа: Department of Biology, University of La Verne, La Verne, CA 91750   USA, Malaysian Palm Oil Board, 6 Persiaran Institusi, Bandar Baru Bangi, 43000 Selangor, Malaysia, Orion Genomics, 3730 Foundry Way, St. Louis, MO 63110, USA
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