User profiles for Peter Midford
![]() | Peter MidfordSRI International Verified email at ai.sri.com Cited by 9875 |
Estimating a binary character's effect on speciation and extinction
Determining whether speciation and extinction rates depend on the state of a particular
character has been of long-standing interest to evolutionary biologists. To assess the effect of a …
character has been of long-standing interest to evolutionary biologists. To assess the effect of a …
The MetaCyc database of metabolic pathways and enzymes-a 2019 update
…, A Kothari, M Krummenacker, PE Midford… - Nucleic acids …, 2020 - academic.oup.com
MetaCyc ( MetaCyc.org ) is a comprehensive reference database of metabolic pathways and
enzymes from all domains of life. It contains 2749 pathways derived from more than 60 000 …
enzymes from all domains of life. It contains 2749 pathways derived from more than 60 000 …
The MetaCyc database of metabolic pathways and enzymes
…, M Latendresse, PE Midford… - Nucleic acids …, 2018 - academic.oup.com
MetaCyc ( https://MetaCyc.org ) is a comprehensive reference database of metabolic pathways
and enzymes from all domains of life. It contains more than 2570 pathways derived from >…
and enzymes from all domains of life. It contains more than 2570 pathways derived from >…
The BioCyc collection of microbial genomes and metabolic pathways
…, M Krummenacker, PE Midford… - Briefings in …, 2019 - academic.oup.com
BioCyc.org is a microbial genome Web portal that combines thousands of genomes with
additional information inferred by computer programs, imported from other databases and …
additional information inferred by computer programs, imported from other databases and …
Synthesis of phylogeny and taxonomy into a comprehensive tree of life
…, EJ McTavish, PE Midford… - Proceedings of the …, 2015 - pnas.org
Reconstructing the phylogenetic relationships that unite all lineages (the tree of life) is a grand
challenge. The paucity of homologous character data across disparately related lineages …
challenge. The paucity of homologous character data across disparately related lineages …
An introduction to phylogenetically based statistical methods, with a new method for confidence intervals on ancestral values
Interspecific comparisons have played a prominent role in evolutionary biology at least since
the time of Charles Darwin. Since 1985, the “comparative method” has been revitalized by …
the time of Charles Darwin. Since 1985, the “comparative method” has been revitalized by …
Within-species variation and measurement error in phylogenetic comparative methods
Most phylogenetically based statistical methods for the analysis of quantitative or continuously
varying phenotypic traits assume that variation within species is absent or at least …
varying phenotypic traits assume that variation within species is absent or at least …
The EcoCyc database in 2021
…, A Kothari, M Krummenacker, PE Midford… - Frontiers in …, 2021 - frontiersin.org
The EcoCyc model-organism database collects and summarizes experimental data for
Escherichia coli K-12. EcoCyc is regularly updated by the manual curation of individual database …
Escherichia coli K-12. EcoCyc is regularly updated by the manual curation of individual database …
Exploring power and parameter estimation of the BiSSE method for analyzing species diversification
Background There has been a considerable increase in studies investigating rates of
diversification and character evolution, with one of the promising techniques being the BiSSE …
diversification and character evolution, with one of the promising techniques being the BiSSE …
Finding our way through phenotypes
Despite a large and multifaceted effort to understand the vast landscape of phenotypic data,
their current form inhibits productive data analysis. The lack of a community-wide, consensus…
their current form inhibits productive data analysis. The lack of a community-wide, consensus…