Here, we describe a tool suite that functions on all of the commonly known FASTQ format
variants and provides a pipeline for manipulating next generation sequencing data taken from …

Galaxy (homepage: https://galaxyproject.org , main public server: https://usegalaxy.org ) is a
web-based scientific analysis platform used by tens of thousands of scientists across the …

Accessing and analyzing the exponentially expanding genomic sequence and functional
data pose a challenge for biomedical researchers. Here we describe an interactive system, …

High-throughput data production technologies, particularly ‘next-generation’ DNA sequencing,
have ushered in widespread and disruptive changes to biomedical research. Making …

High‐throughput data production has revolutionized molecular biology. However, massive
increases in data generation capacity require analysis approaches that are more …

Big data abound in microbiology, but the workflows designed to enable researchers to interpret
data can constrain the biological questions that can be asked. Five years after anvi’o was …

Galaxy ( https://galaxyproject.org ) is a web-based computational workbench used by tens
of thousands of scientists across the world to analyze large biomedical datasets. Since 2005, …

To complement the human Encyclopedia of DNA Elements (ENCODE) project and to enable
a broad range of mouse genomics efforts, the Mouse ENCODE Consortium is applying the …

Whole genome sequencing (WGS) allows researchers to pinpoint genetic differences
between individuals and significantly shortcuts the costly and time-consuming part of forward …

This article describes a set of alignments of 28 vertebrate genome sequences that is provided
by the UCSC Genome Browser. The alignments can be viewed on the Human Genome …